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Created with Raphaël 2.2.029Mar252423211918171615141311109875432129Feb262524232221181716151211109875432129Jan28272625232221201918171514121110865430Dec29282625Adding sorting on input filesMerge branch 'develop' into fix-svcallers-vcfFix report, the logic to display SE or PE from flexiprep stats is deprecated since we always use flexiprep->cutadapt in SE mode. So only SE mode variables are generated and should be displayed in the report.Allow to specify samplename for breakdancer vcf outputAdded output file to snptestAdded base version of snptestAdded test when all files are thereAdd all options to starRaised memoryFix style warningsCorrect incorrect format of indelsAdded contig checkAdded checksAdded spec validationChanged sample IDAdded index as output fileAdd all options to starMerge branch 'develop' into feature-cnvpipelineMerge branch 'fix-htseqcount_sort_order' into 'develop' Set default htseq-count sorting order to posFixed scatteringFixed extensionFixed versionTestsAdded gwastest to executableStyle fixesMerge remote-tracking branch 'remotes/origin/develop' into feature-snp_testMerge branch 'release-0.6.0' into 'develop' Bump version to 0.7.0-SNAPSHOTMerge branch 'release-0.6.0' into 'master' v0.6.0v0.6.0Bumb version to 0.6.0Fix memoryRaised memoryFix compile warningRaise memoryFixed testsMerge branch 'develop' into feature-cnvpipelineUpdate version to 0.6.0-RC1Fix licenseSimplify file names