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Created with Raphaël 2.2.012Dec109876542130Nov292827262524232221201918171614111098754231Oct282726252421171413121110654329Sep2827262221201917161513102131Aug2625242322211817151110954129Jul28262522212019141387654129Jun2827242120171514131087632131MayTypoFixing BIOPET-496Fixed comments of merge requestsAdded gatk to biopet build stepAdded gatk/queue as submoduleFormat fixesFormat fixesAdded unit testingFormat fixesFixed input and outputChange input and outputAdding bgzipped fastaSimplify dbsnpAdding validateVcf to shiva on dbsnpChange logging typeFixed final messageFixed position checkAdded base version of validate vcfAdded to executableMerge branch 'fix-xhmm' into 'develop' Merge branch 'fix-BIOPET-491' into 'develop' fix dependency issueFixed lazy valtypoMerge remote-tracking branch 'remotes/origin/develop' into fix-BIOPET-491Only compress plots by defaultAdded dependency for summaryAdding stats to output of qc commandshuffle some aroundadditional config valuesFixing dir namesFixed compile errorMove config reportMove graph filesfix some formattingMove log filesdocs on xhmmFix compile errorFixing BIOPET-488Merge remote-tracking branch 'remotes/origin/develop' into for-BIOPET-476