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Created with Raphaël 2.2.09May8765432130Apr29282726252221181615141312111087654131Mar3029252423211918171615141311109875432129Feb26252423Fixed summary keysAdded tests for depsattempt to fix cyclic errorsby default report the SVtype in the ALT fieldenableRCtrimming is used to enable trimming of Reverse Complement versions of adaptersMove extension to biopet-extensionMerge remote-tracking branch 'remotes/origin/develop' into fix-svcallers-vcfStyle fixesFix samplenaming in breakdancerFixed summary statsFix samplename columnfix stuff that went wrong during mergeMerge branch 'develop' into fix-gvcfs-extractremove dummy codeStyle fixesMerge remote-tracking branch 'remotes/origin/develop' into biopet-biosMerge branch 'feature-disable_merging' into 'develop' Added init test on write depsAddec config option to disable merging of countfilesNo private mutableMerge remote-tracking branch 'remotes/origin/develop' into feature-more_unit_testsMerge branch 'fix-vcf_filter_test' into 'develop' Added input and output vcf to summaryFixed summaryAdd exclusions for specific valuesRemove empty lineEmtp stats when stats file does not existNo private mutableAdding loggingSkip checks when running on an empty vcf fileCorrect testsAdd option to disable scatteringFixed file nameMerge branch 'feature-cutadapt-adapterreporting' into 'develop' Replace VEP with zcat when no variants in vcf fileAdded more test to summaryValue utilsAdded more test to summary utilsUpdate catvariantsFix compile errorsMerge remote-tracking branch 'remotes/origin/develop' into feature-scatter_annotation