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Created with Raphaël 2.2.05May432130Apr29282726252221181615141312111087654131Mar3029252423211918171615141311109875432129Feb26252423222118171615Added unit tests to IoUtilsFixed implicit classMerge branch 'fix-vcftovcf' into feature-scatter_annotationCode improvementAdded scala docsRelax the reference checkFixed importMove filesMerge remote-tracking branch 'remotes/origin/develop' into feature-cutadapt-adapterreportingStyle changesMerge remote-tracking branch 'remotes/origin/develop' into feature-scatter_annotationMerge remote-tracking branch 'remotes/origin/develop' into fix-gatk_extension_cleanupMove packageMerge branch 'toucan-groups' into 'develop' Remove duplicated extensionsRemove unused traitautostyle changesget gvcfs from shivaMerge branch 'develop' into toucan-groupsMerge remote-tracking branch 'remotes/origin/develop' into biopet-biosMerge branch 'feature-grep' into 'develop' Added grep as extensionMoved files to correct placeMerge remote-tracking branch 'remotes/origin/develop' into biopet-biosAdded fake exeMoved filesMerge branch 'docs-Bios' into 'feature-bios_base_counts' Merge remote-tracking branch 'remotes/origin/develop' into fix-vcf_filter_testMerge remote-tracking branch 'remotes/origin/develop' into toucan-groupsMerge remote-tracking branch 'remotes/origin/develop' into feature-scatter_annotationMerge branch 'feature-queue_licence' into 'develop' Change name of main objectAdded allele index to depsCorrect importsAdd deprication tagRemove old licence from headerFixed graph issueFixed outputFiles of fifo pipeFixed unit testsAdd documentation about BIOS counts