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Created with Raphaël 2.2.023Nov2221201918171614111098754231Oct282726252421171413121110654329Sep2827262221201917161513102131Aug2625242322211817151110954129Jul28262522212019141387654129Jun2827242120171514131087632131May30292726252423201918171514131211xhmm discover wrapperxhmm normalize wrapperxhmm pca wrapperxhmm matrixmergegatkdepths wrapperXHMM abstract classfix BIOPET-464Fixing buttonsAdded clipping and mapping quality to multisamplemappingreportFixed tsv parsingFixed typoAdded Centrifuge to list of available options, included the -jobQueue all.q optionFixed errorFixed bugAdding clipping and mapping quality plots to reportFormat fixesImplement new methodsAdded common functionsMerge branch 'feature_annotation_versions' into 'develop' Added a bit more docs to argAdded centrifuge to docsMerge branch 'fix-BIOPET-353' into 'develop' Explict test noExceptionChanged to smaller and readable testAdded text to argumentsAdd bamstats to summaryFix output filesSimplify lineplot codeChanged reports summary valuesAdding mapping quality and clipping stats to summaryFixed unit testsMoving flagstats from bamstats to summaryFixed bamstats for single endAdded referenceFixed compile errorAdding output fileAdd basic version of bamstats to pipelineFixing BIOPET-353Fixing config filesFixed test