Commits · dbc78f53904469f9abaa3eeecf8e1c4e9b051829 · Mirrors / biopet.biopet

Mar 06, 2015
- Add general heatmap plotting fallback when error is encountered · dbc78f53
  bow authored 10 years ago
  
  dbc78f53
- Rename for consistency · e5dd66c8
  bow authored 10 years ago
  
  e5dd66c8
Mar 05, 2015
- Update formatting · 51031007
  bow authored 10 years ago
  
  51031007
- Initial update for GentrapTest · 497eef6f
  bow authored 10 years ago
  
  497eef6f
- Avoid NullPointerException when checking for R2 in Gentrap · e714e45d
  bow authored 10 years ago
  
  e714e45d
- Put all expression table outputs into a single directory · 40eeaa44
  bow authored 10 years ago
  
  40eeaa44
- Add heatmap plot jobs for all output · 393af584
  bow authored 10 years ago
  
  393af584
- Create fallback plot when data points for heatmap is not enough · 307af384
  bow authored 10 years ago
  
  307af384
- Use scalaz's implicit option for boolean · 67ae06c1
  bow authored 10 years ago
  
  67ae06c1
- Initial heat map plotting · e7764348
  bow authored 10 years ago
  
  e7764348
- Update heatmap wrapper · 87396efb
  bow authored 10 years ago
  
  87396efb
- Update heatmap plot sizes · 4f78c3f1
  bow authored 10 years ago
  
  4f78c3f1
- Update heatmap plotting script · 897fbf4e
  bow authored 10 years ago
  
  897fbf4e
- Merge branch 'develop' into feature-gentrap · 7eec6949
  bow authored 10 years ago
  
  7eec6949
- Add job for writing PDF report · 6d78e827
  bow authored 10 years ago
  
  6d78e827
- Merge branch 'patch-executable_check' into 'develop' · 8fbf2803
  bow authored 10 years ago
  
  Patch executable check See merge request !114
  8fbf2803
- Possible to not convert executable to CanonicalPath · 000989d7
  Peter van 't Hof authored 10 years ago
  
  000989d7
- Possible to not convert executable to CanonicalPath · 043874a8
  Peter van 't Hof authored 10 years ago
  
  043874a8
- Add initial wrapper for pdflatex · fc509cee
  bow authored 10 years ago
  
  fc509cee
- Pass path to logo to template generator · 5acdef81
  bow authored 10 years ago
  
  5acdef81
- Formatting updates · c55ab605
  bow authored 10 years ago
  
  c55ab605
- Add indexing job to CustomVarScan · 2b9fd392
  bow authored 10 years ago
  
  2b9fd392
- Update Tabix wrapper · 6ca9d8be
  bow authored 10 years ago
  
  6ca9d8be
- Merge branch 'patch-carp' into 'develop' · 27035485
  bow authored 10 years ago
  
  Patch carp Merge to fix the wrong directory of MACS2 single samples runs See merge request !113
  27035485
- Move custom RScript wrapper to Gentrap directory · dd9b9bb9
  bow authored 10 years ago
  
  dd9b9bb9
- Allow custom extensions to have their exes set-up via config · 7dd62911
  bow authored 10 years ago
  
  7dd62911
- Formatting updates · cf117dac
  bow authored 10 years ago
  
  cf117dac
- Add PDF template writing job to main Gentrap · 6f33fef8
  bow authored 10 years ago
  
  6f33fef8
- Update wrapper for PDF template writer · dd732326
  bow authored 10 years ago
  
  dd732326
- Update base gentrap test with required config value defined · df0760f8
  bow authored 10 years ago
  
  df0760f8
- Move PDF templates to another directory · 53a6b61e
  bow authored 10 years ago
  
  53a6b61e
- Formatting updates · df9dfa59
  bow authored 10 years ago
  
  df9dfa59
Mar 04, 2015
- Add pdf report generator wrapper · d6ffd898
  bow authored 10 years ago
  
  d6ffd898
- Add PDF report templates · 47bdab9b
  bow authored 10 years ago
  
  47bdab9b
- Modify pdf_report.py with new base layout · 586c9070
  bow authored 10 years ago
  
  586c9070
- Add templates for plotting scripts and their wrappers · 4cd2f2d5
  bow authored 10 years ago
  
  4cd2f2d5
- Disable untested expMeasure modes · b660ab1c
  bow authored 10 years ago
  
  b660ab1c
- Expose enum-based config values as public attributes · 6b22cc16
  bow authored 10 years ago
  
  6b22cc16
- Formatting updates · 32816835
  bow authored 10 years ago
  
  32816835
- Add variant calling jobs and expose its output as attribute and in summary · 062f17b7
  bow authored 10 years ago
  
  062f17b7