Commits · d46c0d7da9aaf8caa9cd39d0fcba23bbc384e5e9 · Mirrors / biopet.biopet

Jun 09, 2014
- Changed env variable for config to BIOPET_CONFIG · 4ca753b0
  Peter van 't Hof authored 10 years ago
  
  4ca753b0
- Switched to InProcessFunction, no cluster job needed for ln commands · 709f5517
  Peter van 't Hof authored 10 years ago
  
  709f5517
Jun 06, 2014
- Changed key names of get functions · 8a3d69a0
  Peter van 't Hof authored 10 years ago
  
  8a3d69a0
- Added getThreads function · 17ebb979
  Peter van 't Hof authored 10 years ago
  
  17ebb979
- Added merge config · 5a4df715
  Peter van 't Hof authored 10 years ago
  
  5a4df715
- Raise of an error at wrong JSON format · 03e66819
  Peter van 't Hof authored 10 years ago
  
  03e66819
Jun 05, 2014
- Raise an error if the JSON file for configs is not properly formatted in JSON · 84c365c7
  wyleung authored 10 years ago
  
  84c365c7
- Changed glogal config to global config · 2cec3511
  sajvanderzeeuw authored 10 years ago
  
  2cec3511
Jun 03, 2014
- Moved to flexiprep maven app · af141f38
  Peter van 't Hof authored 10 years ago
  
  af141f38
- Moved to mapping maven app · 525e2ecc
  Peter van 't Hof authored 10 years ago
  
  525e2ecc
- No functional changes · 08a62d84
  Peter van 't Hof authored 10 years ago
  
  08a62d84
- Added shading for framework, Queue is now included in the jar of the framework · d5a50842
  Peter van 't Hof authored 10 years ago
  
  d5a50842
- BiopetQScript is now abstract · 80512eba
  Peter van 't Hof authored 10 years ago
  
  80512eba
- Added Sha1sum wrapper · 157d6e8d
  Peter van 't Hof authored 10 years ago
  
  157d6e8d
- Added Ln wrapper · 59459ae6
  Peter van 't Hof authored 10 years ago
  
  59459ae6
May 27, 2014
- Added general trait (BiopetQScript) that now have multisample functions · 09190f82
  Peter van 't Hof authored 10 years ago
  
  09190f82
May 26, 2014
- Moved aligners to own package · 5d0b4fc9
  Peter van 't Hof authored 10 years ago
  
  5d0b4fc9
- Small changes on config setup · 8d195010
  Peter van 't Hof authored 10 years ago
  
  8d195010
- Added default_clip_mode option · b0317762
  Peter van 't Hof authored 10 years ago
  
  b0317762
- Added scala files to jar and added a main class for each pipeline · 302c6fff
  Peter van 't Hof authored 10 years ago
  
  302c6fff
- Added python parser to buildin python scripts · 2f38f1f1
  Peter van 't Hof authored 10 years ago
  
  2f38f1f1
May 21, 2014
- - Standerize config · 2fb73c96
  Peter van 't Hof authored 10 years ago
  
  2fb73c96
- - Fixed output file · bb158f36
  Peter van 't Hof authored 10 years ago
  
  bb158f36
- - Fixed scattercounts · 31ea0eee
  Peter van 't Hof authored 10 years ago
  
  31ea0eee
- - output file for star · 23084ff1
  Peter van 't Hof authored 10 years ago
  
  23084ff1
May 20, 2014
- - fixed thread option for star · de498a26
  Peter van 't Hof authored 10 years ago
  
  de498a26
- - Fixed output of star · 6ebb058a
  Peter van 't Hof authored 10 years ago
  
  6ebb058a
- - Added wrapper for Star · ca2905e5
  Peter van 't Hof authored 10 years ago
  ca2905e5
May 15, 2014
- Remove submodules · b26d817a
  Peter van 't Hof authored 10 years ago
  
  b26d817a
- remove submodules · ffe46a1f
  Peter van 't Hof authored 10 years ago
  
  ffe46a1f
May 14, 2014
- Added gatk package · c548969b
  Peter van 't Hof authored 10 years ago
  
  c548969b
- add submodules · b2b5e8fc
  Peter van 't Hof authored 10 years ago
  
  b2b5e8fc