Merge branch 'develop' into feature-fix_missing_values
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- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Fastqc.scala 30 additions, 16 deletions...rc/main/scala/nl/lumc/sasc/biopet/extensions/Fastqc.scala
- public/flexiprep/pom.xml 12 additions, 0 deletionspublic/flexiprep/pom.xml
- public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala 2 additions, 2 deletions...la/nl/lumc/sasc/biopet/pipelines/flexiprep/Cutadapt.scala
- public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala 130 additions, 58 deletions...cala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala
- public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepSummary.scala 1 addition, 1 deletion...mc/sasc/biopet/pipelines/flexiprep/FlexiprepSummary.scala
- public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/SeqtkSeq.scala 1 addition, 1 deletion...la/nl/lumc/sasc/biopet/pipelines/flexiprep/SeqtkSeq.scala
- public/flexiprep/src/test/resources/fqc_contaminants_v0101.txt 170 additions, 0 deletions...c/flexiprep/src/test/resources/fqc_contaminants_v0101.txt
- public/flexiprep/src/test/resources/v0101.fq_fastqc/fastqc_data.txt 838 additions, 0 deletions...xiprep/src/test/resources/v0101.fq_fastqc/fastqc_data.txt
- public/flexiprep/src/test/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FastqcV0101Test.scala 80 additions, 0 deletions...umc/sasc/biopet/pipelines/flexiprep/FastqcV0101Test.scala
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