Merge remote-tracking branch 'origin/develop' into feature-gatk_et_option

public/bammetrics/pom.xml

...umc/sasc/biopet/pipelines/bammetrics/alignmentSummary.ssp

...lumc/sasc/biopet/pipelines/bammetrics/bamMetricsFront.ssp

...ces/nl/lumc/sasc/biopet/pipelines/bammetrics/bamStats.ssp

.../sasc/biopet/pipelines/bammetrics/bammetricsInputFile.ssp

...c/sasc/biopet/pipelines/bammetrics/covstatsMultiTable.ssp

...nl/lumc/sasc/biopet/pipelines/bammetrics/covstatsPlot.ssp

...s/nl/lumc/sasc/biopet/pipelines/bammetrics/insertSize.ssp

...biopet/pipelines/bammetrics/scripts/bedtools_cov_stats.py

...nl/lumc/sasc/biopet/pipelines/bammetrics/wgsHistogram.ssp

...nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala

...c/sasc/biopet/pipelines/bammetrics/BammetricsReport.scala

...c/biopet/pipelines/bammetrics/scripts/CoverageStats.scala

...umc/sasc/biopet/pipelines/bammetrics/BamMetricsTest.scala

public/basty/pom.xml

...ain/scala/nl/lumc/sasc/biopet/pipelines/basty/Basty.scala

...cala/nl/lumc/sasc/biopet/pipelines/basty/BastyTrait.scala

public/biopet-core/pom.xml

public/biopet-core/src/main/resources/log4j.properties

...t-core/src/main/resources/nl/lumc/sasc/biopet/License.txt