Merge branch 'feature-bamToBigWig' into 'develop'
Feature bam to big wig feature ready for merge, see also #86 See merge request !92
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- .idea/compiler.xml 1 addition, 0 deletions.idea/compiler.xml
- .idea/encodings.xml 1 addition, 0 deletions.idea/encodings.xml
- .idea/libraries/Maven__nl_lumc_sasc_Bam2Wig_0_3_0_DEV.xml 13 additions, 0 deletions.idea/libraries/Maven__nl_lumc_sasc_Bam2Wig_0_3_0_DEV.xml
- .idea/modules.xml 1 addition, 0 deletions.idea/modules.xml
- .idea/scala_compiler.xml 2 additions, 0 deletions.idea/scala_compiler.xml
- protected/basty/Basty.iml 1 addition, 0 deletionsprotected/basty/Basty.iml
- protected/biopet-gatk-pipelines/BiopetGatkPipelines.iml 1 addition, 0 deletionsprotected/biopet-gatk-pipelines/BiopetGatkPipelines.iml
- protected/biopet-gatk-pipelines/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala 4 additions, 1 deletion...ala/nl/lumc/sasc/biopet/pipelines/gatk/GatkPipeline.scala
- protected/biopet-gatk-pipelines/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkVariantcalling.scala 46 additions, 34 deletions.../lumc/sasc/biopet/pipelines/gatk/GatkVariantcalling.scala
- protected/biopet-protected-package/BiopetProtectedPackage.iml 1 addition, 0 deletions...ected/biopet-protected-package/BiopetProtectedPackage.iml
- public/bam2wig/Bam2Wig.iml 92 additions, 0 deletionspublic/bam2wig/Bam2Wig.iml
- public/bam2wig/pom.xml 29 additions, 0 deletionspublic/bam2wig/pom.xml
- public/bam2wig/src/main/scala/nl/lumc/sasc/biopet/pipelines/bamtobigwig/Bam2Wig.scala 55 additions, 0 deletions...a/nl/lumc/sasc/biopet/pipelines/bamtobigwig/Bam2Wig.scala
- public/bam2wig/src/main/scala/nl/lumc/sasc/biopet/pipelines/bamtobigwig/BamToChromSizes.scala 30 additions, 0 deletions...c/sasc/biopet/pipelines/bamtobigwig/BamToChromSizes.scala
- public/biopet-framework/BiopetFramework.iml 5 additions, 0 deletionspublic/biopet-framework/BiopetFramework.iml
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala 2 additions, 1 deletion...umc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala 3 additions, 0 deletions...rk/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/WigToBigWig.scala 2 additions, 2 deletions...in/scala/nl/lumc/sasc/biopet/extensions/WigToBigWig.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/igvtools/IGVTools.scala 1 addition, 1 deletion...la/nl/lumc/sasc/biopet/extensions/igvtools/IGVTools.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/igvtools/IGVToolsCount.scala 7 additions, 9 deletions.../lumc/sasc/biopet/extensions/igvtools/IGVToolsCount.scala
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