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Commit f732e3ea authored by Peter van 't Hof's avatar Peter van 't Hof
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Added vmem option and uses by default 4G

parent 991903f5
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......@@ -33,6 +33,7 @@ class Fastqc(val globalConfig: Config) extends CommandLineFunction {
var maxThreads: Int = config.getAsInt("maxthreads", 24)
if (threads > maxThreads) threads = maxThreads
nCoresRequest = Option(threads)
this.jobNativeArgs :+= "-l h_vmem="+config.getAsString("vmem", "4G")
}
def commandLine = {
......
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