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Commit f5ffdbb4 authored by Wai Yi Leung's avatar Wai Yi Leung
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sequenceDictionary is a File... fixed

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public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SortVcf.scala
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View file @ f5ffdbb4
......@@ -31,7 +31,7 @@ class SortVcf(val root: Configurable) extends Picard {
var output: File = _
@Argument(doc = "Sequence dictionary to use", required = false)
var sequenceDictionary: String = config("sort_order", default = "coordinate")
var sequenceDictionary: File = _
/** Returns command to execute */
override def cmdLine = super.cmdLine +
......
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