Merge branch 'fix-varscan_threads' into 'develop'

Reduce threads for varscan

Reduce over scheduling of threads for varscan

See merge request !446

shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala

@@ -60,7 +60,9 @@ class VarscanCnsSingleSample(val root: Configurable) extends Variantcaller {
       val varscan = new VarscanMpileup2cns(this)
       varscan.vcfSampleList = Some(sampleFile)
 
-      add(mpileup | new FixMpileup(this) | varscan | new Bgzip(this) > sampleVcf)
+      val variantcallingJob = mpileup | new FixMpileup(this) | varscan | new Bgzip(this) > sampleVcf
+      variantcallingJob.threadsCorrection = -2
+      add(variantcallingJob)
       add(Tabix(this, sampleVcf))
 
       sampleVcf