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biopet.biopet
Commits
f16beb21
Commit
f16beb21
authored
Feb 17, 2015
by
Peter van 't Hof
Browse files
fix version on fastqsync
parent
2a2e4b44
Changes
1
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FastqSync.scala
View file @
f16beb21
...
...
@@ -22,8 +22,7 @@ import scalaz._, Scalaz._
import
htsjdk.samtools.fastq.
{
AsyncFastqWriter
,
BasicFastqWriter
,
FastqReader
,
FastqRecord
}
import
org.broadinstitute.gatk.utils.commandline.
{
Input
,
Output
}
import
nl.lumc.sasc.biopet.core.BiopetJavaCommandLineFunction
import
nl.lumc.sasc.biopet.core.ToolCommand
import
nl.lumc.sasc.biopet.core.
{
BiopetExecutable
,
BiopetJavaCommandLineFunction
,
ToolCommand
}
import
nl.lumc.sasc.biopet.core.config.Configurable
/**
...
...
@@ -85,7 +84,7 @@ class FastqSync(val root: Configurable) extends BiopetJavaCommandLineFunction wi
}
}
else
(
0
,
0
,
0
)
Map
(
"version"
->
getVersion
,
Map
(
"version"
->
BiopetExecutable
.
getVersion
,
"num_reads_discarded_R1"
->
countFilteredR1
,
"num_reads_discarded_R2"
->
countFilteredR2
,
"num_reads_kept"
->
countRLeft
...
...
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