Commit f16beb21 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

fix version on fastqsync

parent 2a2e4b44
......@@ -22,8 +22,7 @@ import scalaz._, Scalaz._
import htsjdk.samtools.fastq.{ AsyncFastqWriter, BasicFastqWriter, FastqReader, FastqRecord }
import org.broadinstitute.gatk.utils.commandline.{ Input, Output }
import nl.lumc.sasc.biopet.core.BiopetJavaCommandLineFunction
import nl.lumc.sasc.biopet.core.ToolCommand
import nl.lumc.sasc.biopet.core.{BiopetExecutable, BiopetJavaCommandLineFunction, ToolCommand}
import nl.lumc.sasc.biopet.core.config.Configurable
/**
......@@ -85,7 +84,7 @@ class FastqSync(val root: Configurable) extends BiopetJavaCommandLineFunction wi
}
} else (0, 0, 0)
Map("version" -> getVersion,
Map("version" -> BiopetExecutable.getVersion,
"num_reads_discarded_R1" -> countFilteredR1,
"num_reads_discarded_R2" -> countFilteredR2,
"num_reads_kept" -> countRLeft
......
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