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biopet.biopet
Commits
f018ba9f
Commit
f018ba9f
authored
Jan 19, 2017
by
Peter van 't Hof
Browse files
Adding stdout file back to outputs
parent
2467bc10
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/WriteDependencies.scala
View file @
f018ba9f
...
...
@@ -116,7 +116,7 @@ object WriteDependencies extends Logging with Configurable {
"depends_on_intermediate"
->
BiopetQScript
.
safeOutputs
(
f
).
getOrElse
(
Seq
()).
exists
(
files
(
_
).
isIntermediate
),
"depends_on_jobs"
->
BiopetQScript
.
safeOutputs
(
f
).
getOrElse
(
Seq
()).
toList
.
flatMap
(
files
(
_
).
outputJobNames
).
distinct
,
"output_used_by_jobs"
->
BiopetQScript
.
safeOutputs
(
f
).
getOrElse
(
Seq
()).
toList
.
flatMap
(
files
(
_
).
inputJobNames
).
distinct
,
"outputs"
->
BiopetQScript
.
safeOutputs
(
f
).
getOrElse
(
Seq
()).
toList
,
"outputs"
->
(
f
.
jobOutputFile
::
BiopetQScript
.
safeOutputs
(
f
).
getOrElse
(
Seq
()).
toList
)
,
"inputs"
->
BiopetQScript
.
safeOutputs
(
f
).
getOrElse
(
Seq
()).
toList
,
"done_files"
->
BiopetQScript
.
safeDoneFiles
(
f
).
getOrElse
(
Seq
()).
toList
,
"fail_files"
->
BiopetQScript
.
safeFailFiles
(
f
).
getOrElse
(
Seq
()).
toList
,
...
...
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