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Commit f018ba9f authored by Peter van 't Hof's avatar Peter van 't Hof
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Adding stdout file back to outputs

parent 2467bc10
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biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/WriteDependencies.scala
View file @ f018ba9f
......@@ -116,7 +116,7 @@ object WriteDependencies extends Logging with Configurable {
"depends_on_intermediate" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).exists(files(_).isIntermediate),
"depends_on_jobs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList.flatMap(files(_).outputJobNames).distinct,
"output_used_by_jobs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList.flatMap(files(_).inputJobNames).distinct,
"outputs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList,
"outputs" -> (f.jobOutputFile :: BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList),
"inputs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList,
"done_files" -> BiopetQScript.safeDoneFiles(f).getOrElse(Seq()).toList,
"fail_files" -> BiopetQScript.safeFailFiles(f).getOrElse(Seq()).toList,
......
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