Skip to content

GitLab

Commit f018ba9f authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Adding stdout file back to outputs

parent 2467bc10
Hide whitespace changes
Inline Side-by-side
Showing with 1 addition and 1 deletion
biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/WriteDependencies.scala
View file @ f018ba9f
......@@ -116,7 +116,7 @@ object WriteDependencies extends Logging with Configurable {
"depends_on_intermediate" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).exists(files(_).isIntermediate),
"depends_on_jobs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList.flatMap(files(_).outputJobNames).distinct,
"output_used_by_jobs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList.flatMap(files(_).inputJobNames).distinct,
"outputs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList,
"outputs" -> (f.jobOutputFile :: BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList),
"inputs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList,
"done_files" -> BiopetQScript.safeDoneFiles(f).getOrElse(Seq()).toList,
"fail_files" -> BiopetQScript.safeFailFiles(f).getOrElse(Seq()).toList,
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment