Merge branch 'feature-extract_fix' into 'develop'
Feature extract fix Missed a test case which again manifests into a bug where filtering doesn't work for FASTQ files with description lines. Anyway, this updates the test case and fixes the problem. EDIT: also fixes bug that arises when supplying multiple intervals. See merge request !34
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- biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala 11 additions, 6 deletions...scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
- biopet-framework/src/test/resources/paired01a.fq 1 addition, 1 deletionbiopet-framework/src/test/resources/paired01a.fq
- biopet-framework/src/test/resources/paired01b.fq 1 addition, 1 deletionbiopet-framework/src/test/resources/paired01b.fq
- biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastqUnitTest.scala 23 additions, 14 deletions.../lumc/sasc/biopet/tools/ExtractAlignedFastqUnitTest.scala
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