Skip to content
Snippets Groups Projects
Commit ea14a2ad authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix test

parent df5b8d8c
No related branches found
No related tags found
No related merge requests found
......@@ -122,7 +122,7 @@ trait ShivaVariantcallingTestTrait extends TestNGSuite with Matchers {
pipeline.functions.count(_.isInstanceOf[VtDecompose]) shouldBe (if (decompose) callers.size else 0)
pipeline.functions.count(_.isInstanceOf[GenotypeConcordance]) shouldBe (if (referenceVcf.isDefined) 1 + callers.size else 0)
pipeline.summarySettings.get("variantcallers") shouldBe Some(callers.toList)
pipeline.summarySettings.get("variantcallers").map(_.asInstanceOf[List[String]].toSet) shouldBe Some(callers.toSet)
pipeline.summarySettings.get("amplicon_bed") shouldBe Some(ampliconBedFile.map(_.getAbsolutePath))
pipeline.summarySettings.get("regions_of_interest") shouldBe Some(roiBedFiles.map(_.getAbsolutePath))
}
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment