Fix bug on output name

e995516a · Peter van 't Hof · f35b7861 · e995516a
Commit e995516a authored Dec 02, 2014 by Peter van 't Hof
Hide whitespace changes
Inline Side-by-side

Showing with 1 addition and 1 deletion

public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala .../scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala +1 -1

No files found.
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
@@ -236,7 +236,7 @@ object BastyGenerateFasta extends ToolCommand {

  protected def writeVariantsOnly() {
    val writer = new PrintWriter(cmdArgs.outputVariants)
-    writer.println(">" + cmdArgs.sampleName)
+    writer.println(">" + cmdArgs.outputName)
    val vcfReader = new VCFFileReader(cmdArgs.inputVcf, false)
    for (vcfRecord <- vcfReader if (!cmdArgs.snpsOnly || vcfRecord.isSNP)) yield {
      writer.print(getMaxAllele(vcfRecord))