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biopet.biopet
Commits
e548e078
Commit
e548e078
authored
Jan 18, 2017
by
Pappas
Browse files
Fix for error whtn creatin the report
parent
4f5b8b61
Changes
1
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Inline
Side-by-side
bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BammetricsReport.scala
View file @
e548e078
...
...
@@ -345,8 +345,7 @@ object BammetricsReport extends ReportBuilder {
val
pathValues
:
Map
[
String
,
Array
[
Any
]]
=
paths
.
map
{
case
(
key
,
path
)
=>
val
value
=
summary
.
getValueAsArray
(
sampleId
,
libId
,
path
:
_
*
)
require
(
value
.
isDefined
,
s
"Sample: $sampleId, library: $libId on path: '${path.mkString("
,
")}' does not exist in summary"
)
key
->
value
.
get
key
->
value
.
getOrElse
(
Array
())
}
require
(
pathValues
.
map
(
_
.
_2
.
size
).
toList
.
distinct
.
size
==
1
,
s
"Arrays in summary does not have the same number of values, $paths"
)
pathValues
...
...
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