Fix chunking bug on vcfstats

e193f1b6 · Peter van 't Hof · 1cb942c6 · e193f1b6
Commit e193f1b6 authored Feb 17, 2015 by Peter van 't Hof
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfStats.scala
@@ -164,8 +164,8 @@ object VcfStats extends ToolCommand {
    val intervals: List[Interval] = (
      for (
        seq <- header.getSequenceDictionary.getSequences;
-        chunks = seq.getSequenceLength / 10000000;
-        i <- 1 until chunks
+        chunks = (seq.getSequenceLength / 10000000) + (if (seq.getSequenceLength % 10000000 == 0) 0 else 1);
+        i <- 1 to chunks
      ) yield {
        val size = seq.getSequenceLength / chunks
        val begin = size * (i - 1) + 1