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biopet.biopet
Commits
dc0495a6
Commit
dc0495a6
authored
May 09, 2017
by
pjvan_thof
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Change fastq to intermediate
parent
9b1ebb8b
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1
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1 changed file
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+3
-1
gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala
...ala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala
+3
-1
No files found.
gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala
View file @
dc0495a6
...
...
@@ -123,7 +123,9 @@ class GearsSingle(val parent: Configurable)
if
(
r1
.
size
==
1
)
r1
.
head
else
{
val
outputFile
=
new
File
(
outputDir
,
"merged.R1.fq.gz"
)
add
(
Zcat
(
this
,
r1
)
|
new
Gzip
(
this
)
>
outputFile
)
val
merge
=
Zcat
(
this
,
r1
)
|
new
Gzip
(
this
)
>
outputFile
merge
.
isIntermediate
=
true
add
(
merge
)
outputFile
}
...
...
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