Commit dc0495a6 authored by pjvan_thof's avatar pjvan_thof
Browse files

Change fastq to intermediate

parent 9b1ebb8b
......@@ -123,7 +123,9 @@ class GearsSingle(val parent: Configurable)
if (r1.size == 1) r1.head
else {
val outputFile = new File(outputDir, "merged.R1.fq.gz")
add(Zcat(this, r1) | new Gzip(this) > outputFile)
val merge = Zcat(this, r1) | new Gzip(this) > outputFile
merge.isIntermediate = true
add(merge)
outputFile
}
......
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