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biopet.biopet
Commits
d9396e61
Commit
d9396e61
authored
Apr 30, 2016
by
Peter van 't Hof
Browse files
Fixed mapping report
parent
766209e0
Changes
1
Hide whitespace changes
Inline
Side-by-side
mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingReport.scala
View file @
d9396e61
...
...
@@ -33,8 +33,8 @@ object MappingReport extends ReportBuilder {
/** Name of report */
val
reportName
=
"Mapping Report"
override
def
extFiles
=
super
.
extFiles
++
List
(
"js/gears.js"
)
.
map
(
x
=>
ExtFile
(
"/nl/lumc/sasc/biopet/pipelines/gears/report/ext"
+
x
,
x
))
override
def
extFiles
=
super
.
extFiles
++
List
(
"js/gears.js"
,
"js/krona-2.0.js"
,
"img/krona/loading.gif"
,
"img/krona/hidden.png"
,
"img/krona/favicon.ico"
)
.
map
(
x
=>
ExtFile
(
"/nl/lumc/sasc/biopet/pipelines/gears/report/ext
/
"
+
x
,
x
))
def
krakenExecuted
=
summary
.
getValue
(
sampleId
,
libId
,
"gears"
,
"stats"
,
"krakenreport"
).
isDefined
...
...
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