First commit

.gitmodules

+[submodule "gatk"]
+	path = gatk
+	url = git@git.lumc.nl:biopet/gatk.git
+[submodule "flexiprep"]
+	path = flexiprep
+	url = git@git.lumc.nl:biopet/flexiprep.git
+[submodule "biopet-framework"]
+	path = biopet-framework
+	url = git@git.lumc.nl:biopet/biopet-framework.git

pom.xml

+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+  <modelVersion>4.0.0</modelVersion>
+  <groupId>nl.lumc.sasc</groupId>
+  <artifactId>Biopet</artifactId>
+  <version>0.1.0</version>
+  <packaging>pom</packaging>
+  <name>Biopet</name>
+  <modules>
+    <module>biopet-framework</module>
+    <module>flexiprep</module>
+    <module>gatk</module>
+  </modules>
+</project>
\ No newline at end of file