Commit d2673ec5 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed compile error

parent e2b5ad1d
......@@ -15,7 +15,7 @@
package nl.lumc.sasc.biopet.pipelines.shiva
import nl.lumc.sasc.biopet.core.{PipelineCommand, Reference}
import nl.lumc.sasc.biopet.core.{ PipelineCommand, Reference }
import nl.lumc.sasc.biopet.extensions.gatk._
import nl.lumc.sasc.biopet.pipelines.bammetrics.TargetRegions
......@@ -164,7 +164,7 @@ class Shiva(val root: Configurable) extends QScript with MultisampleMappingTrait
} else None
lazy val cnvCalling = if (config("cnv_calling", default = false).asBoolean) {
Some(new Kopisu()(this))
Some(new Kopisu(this))
} else None
lazy val annotation = if (multisampleVariantCalling.isDefined &&
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment