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Commit d2673ec5 authored by Peter van 't Hof's avatar Peter van 't Hof
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Fixed compile error

parent e2b5ad1d
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/Shiva.scala
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......@@ -15,7 +15,7 @@
*/
package nl.lumc.sasc.biopet.pipelines.shiva
import nl.lumc.sasc.biopet.core.{PipelineCommand, Reference}
import nl.lumc.sasc.biopet.core.{ PipelineCommand, Reference }
import nl.lumc.sasc.biopet.core.report.ReportBuilderExtension
import nl.lumc.sasc.biopet.extensions.gatk._
import nl.lumc.sasc.biopet.pipelines.bammetrics.TargetRegions
......@@ -164,7 +164,7 @@ class Shiva(val root: Configurable) extends QScript with MultisampleMappingTrait
} else None
lazy val cnvCalling = if (config("cnv_calling", default = false).asBoolean) {
Some(new Kopisu()(this))
Some(new Kopisu(this))
} else None
lazy val annotation = if (multisampleVariantCalling.isDefined &&
......
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