Commit d1c0ec8b authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added output Files

parent 8145ca77
......@@ -43,7 +43,10 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
def summaryFile = new File(outputDir, sampleId.getOrElse("x") + "-" + libId.getOrElse("x") + ".qc.summary.json")
def summaryFiles = Map()
def summaryFiles: Map[String, File] = {
Map("input_R1" -> input_R1, "output_R1" -> outputFiles("output_R1_gzip")) ++
(if (paired) Map("input_R2" -> input_R2.get, "output_R2" -> outputFiles("output_R2_gzip")) else Map())
}
def summaryData = Map("skip_trim" -> skipTrim, "skip_clip" -> skipClip, "paired" -> paired)
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment