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biopet.biopet
Commits
d190b9e2
Commit
d190b9e2
authored
Mar 23, 2015
by
bow
Browse files
Add nl.lumc.sasc.biopet package object to store package-wide information
parent
9133b3b4
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1
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/package.scala
0 → 100644
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d190b9e2
/**
* Biopet is built on top of GATK Queue for building bioinformatic
* pipelines. It is mainly intended to support LUMC SHARK cluster which is running
* SGE. But other types of HPC that are supported by GATK Queue (such as PBS)
* should also be able to execute Biopet tools and pipelines.
*
* Copyright 2014 Sequencing Analysis Support Core - Leiden University Medical Center
*
* Contact us at: sasc@lumc.nl
*
* A dual licensing mode is applied. The source code within this project that are
* not part of GATK Queue is freely available for non-commercial use under an AGPL
* license; For commercial users or users who do not want to follow the AGPL
* license, please contact us to obtain a separate license.
*/
package
nl.lumc.sasc
import
java.util.Properties
/**
* Common values and functions for the biopet package
*
* @author Wibowo Arindrarto <w.arindrarto@lumc.nl>
*/
package
object
biopet
{
/** Latest git commit hash, with '-dirty' appended if any uncommited changes were present */
val
LastCommitHash
:
String
=
{
val
prop
=
new
Properties
()
prop
.
load
(
getClass
.
getClassLoader
.
getResourceAsStream
(
"git.properties"
))
val
hash
=
prop
.
getProperty
(
"git.commit.id.abbrev"
)
if
(
prop
.
getProperty
(
"git.commit.id.describe-short"
).
endsWith
(
"-dirty"
))
s
"$hash-dirty"
else
hash
}
/** Package version */
// needs the Option here since the value is `null` when we run from an unpackaged JAR
val
Version
:
String
=
Option
(
getClass
.
getPackage
.
getImplementationVersion
).
getOrElse
(
"unpackaged"
)
/** Full version (raw version and latest commit hash) */
val
FullVersion
:
String
=
s
"$Version ($LastCommitHash)"
}
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