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d1384de8

Commit d1384de8 authored 9 years ago by Wai Yi Leung

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Adding Pindel to ShivaSVCalling

parent 7213a031

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Changes 4

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public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/pindel/PindelCaller.scala 4 additions, 4 deletions

.../nl/lumc/sasc/biopet/extensions/pindel/PindelCaller.scala
public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/pindel/PindelConfig.scala 27 additions, 22 deletions

.../nl/lumc/sasc/biopet/extensions/pindel/PindelConfig.scala
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaSvCalling.scala 3 additions, 3 deletions

.../nl/lumc/sasc/biopet/pipelines/shiva/ShivaSvCalling.scala
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/svcallers/Pindel.scala 83 additions, 0 deletions

...l/lumc/sasc/biopet/pipelines/shiva/svcallers/Pindel.scala

with 117 additions and 29 deletions

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