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biopet.biopet
Commits
d08b6c72
Commit
d08b6c72
authored
May 17, 2016
by
Peter van 't Hof
Browse files
Fix format
parent
b34a09a0
Changes
2
Hide whitespace changes
Inline
Side-by-side
bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
View file @
d08b6c72
...
...
@@ -17,11 +17,11 @@ package nl.lumc.sasc.biopet.pipelines.bammetrics
import
java.io.File
import
nl.lumc.sasc.biopet.core.annotations.
{
AnnotationRefFlat
,
RibosomalRefFlat
}
import
nl.lumc.sasc.biopet.core.annotations.
{
AnnotationRefFlat
,
RibosomalRefFlat
}
import
nl.lumc.sasc.biopet.utils.config.Configurable
import
nl.lumc.sasc.biopet.core.summary.SummaryQScript
import
nl.lumc.sasc.biopet.core.
{
BiopetFifoPipe
,
PipelineCommand
,
Reference
,
SampleLibraryTag
}
import
nl.lumc.sasc.biopet.extensions.bedtools.
{
BedtoolsCoverage
,
BedtoolsIntersect
}
import
nl.lumc.sasc.biopet.core.
{
BiopetFifoPipe
,
PipelineCommand
,
Reference
,
SampleLibraryTag
}
import
nl.lumc.sasc.biopet.extensions.bedtools.
{
BedtoolsCoverage
,
BedtoolsIntersect
}
import
nl.lumc.sasc.biopet.extensions.picard._
import
nl.lumc.sasc.biopet.extensions.samtools.SamtoolsFlagstat
import
nl.lumc.sasc.biopet.pipelines.bammetrics.scripts.CoverageStats
...
...
biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedCheck.scala
View file @
d08b6c72
...
...
@@ -6,8 +6,8 @@ import scala.collection.mutable.Set
import
nl.lumc.sasc.biopet.utils.Logging
/**
* Created by pjvanthof on 14/05/16.
*/
* Created by pjvanthof on 14/05/16.
*/
object
BedCheck
{
private
val
cache
:
Set
[(
File
,
File
)]
=
Set
()
...
...
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