Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
cfd88812
Commit
cfd88812
authored
Aug 21, 2016
by
Peter van 't Hof
Browse files
Raised default residental memory for java jobs
parent
9ed130e8
Changes
2
Hide whitespace changes
Inline
Side-by-side
biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetJavaCommandLineFunction.scala
View file @
cfd88812
...
...
@@ -24,6 +24,7 @@ trait BiopetJavaCommandLineFunction extends JavaCommandLineFunction with BiopetC
javaGCHeapFreeLimit
=
config
(
"java_gc_heap_freelimit"
,
default
=
10
)
javaGCTimeLimit
=
config
(
"java_gc_timelimit"
,
default
=
50
)
override
def
defaultResidentFactor
:
Double
=
1.5
override
def
defaultVmemFactor
:
Double
=
2.0
/** Constructs java opts, this adds scala threads */
...
...
biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/CommandLineResources.scala
View file @
cfd88812
...
...
@@ -37,9 +37,10 @@ trait CommandLineResources extends CommandLineFunction with Configurable {
var
vmem
:
Option
[
String
]
=
config
(
"vmem"
)
def
defaultCoreMemory
:
Double
=
2.0
def
defaultVmemFactor
:
Double
=
1.4
def
defaultResidentFactor
:
Double
=
1.2
var
vmemFactor
:
Double
=
config
(
"vmem_factor"
,
default
=
defaultVmemFactor
)
var
residentFactor
:
Double
=
config
(
"resident_factor"
,
default
=
1.2
)
var
residentFactor
:
Double
=
config
(
"resident_factor"
,
default
=
defaultResidentFactor
)
private
var
_coreMemory
:
Double
=
2.0
def
coreMemory
=
_coreMemory
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment