Skip to content
Snippets Groups Projects
Commit c7b2052e authored by bow's avatar bow
Browse files

Merge branch 'develop' into feature-wipereads

parents a33688d6 0ba851aa
No related branches found
No related tags found
No related merge requests found
Hide whitespace changes
Inline Side-by-side
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/VcfFilter.scala
+ 1
− 1
View file @ c7b2052e
......@@ -111,7 +111,7 @@ object VcfFilter extends ToolCommand {
if (record.getAttributeAsInt("DP", -1) >= commandArgs.minTotalDepth &&
genotypes.count(_ == true) >= commandArgs.minSamplesPass &&
bamADvalues.count(_ == true) >= commandArgs.minSamplesPass)
(commandArgs.minBamAlternateDepth <= 0 || bamADvalues.count(_ == true) >= commandArgs.minSamplesPass))
writer.add(record)
}
reader.close
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment