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biopet.biopet
Commits
c1834fcf
Commit
c1834fcf
authored
10 years ago
by
Peter van 't Hof
Committed by
Wai Yi Leung
10 years ago
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Fix dependency bug in flexiprep
(cherry picked from commit
95db7a53
)
parent
d215796c
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public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
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...a/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
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public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
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View file @
c1834fcf
...
...
@@ -186,12 +186,14 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
val
seqstat_R1
=
Seqstat
(
this
,
R1
,
outDir
)
seqstat_R1
.
isIntermediate
=
true
seqstat_R1
.
deps
=
deps
add
(
seqstat_R1
)
addSummarizable
(
seqstat_R1
,
"seqstat_R1"
)
if
(
paired
)
{
val
seqstat_R2
=
Seqstat
(
this
,
R2
,
outDir
)
seqstat_R2
.
isIntermediate
=
true
seqstat_R2
.
deps
=
deps
add
(
seqstat_R2
)
addSummarizable
(
seqstat_R2
,
"seqstat_R2"
)
}
...
...
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