Commit c0f8f2a3 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added executables to testing

parent 7e6ef439
......@@ -19,7 +19,7 @@ class Centrifuge(val root: Configurable) extends BiopetCommandLineFunction with
var inputR2: Option[File] = None
@Input(doc = "Centrifuge index prefix", required = true)
var index: File = config("centrifige_index")
var index: File = config("centrifuge_index")
@Output(doc = "Output with hits per sequence")
var output: File = _
......
......@@ -17,7 +17,7 @@ class CentrifugeKreport(val root: Configurable) extends BiopetCommandLineFunctio
var output: File = _
@Input(doc = "Centrifuge index prefix", required = true)
var index: File = config("centrifige_index", namespace = "centrifuge")
var index: File = config("centrifuge_index", namespace = "centrifuge")
executable = config("exe", default = "centrifuge-kreport", freeVar = false)
......
......@@ -231,6 +231,8 @@ object TestGearsSingle {
val executables = Map(
"kraken" -> Map("exe" -> "test", "db" -> "test"),
"centrifuge" -> Map("exe" -> "test", "centrifuge_index" -> "test"),
"centrifugekreport" -> Map("exe" -> "test"),
"krakenreport" -> Map("exe" -> "test", "db" -> "test"),
"sambamba" -> Map("exe" -> "test"),
"samtools" -> Map("exe" -> "test"),
......
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