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Commit be7e4e74 authored by Peter van 't Hof's avatar Peter van 't Hof
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Auto style fixes

parent 29aad92b
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Showing with 5 additions and 5 deletions
public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMappingReport.scala
View file @ be7e4e74
......@@ -104,7 +104,7 @@ trait MultisampleMappingReportTrait extends MultisampleReportBuilder {
)), Map()))
else Nil) ++
List("Files" -> filesPage
), List(
), List(
"Alignment" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/bammetrics/alignmentSummary.ssp",
Map("showPlot" -> true)),
"Preprocessing" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/bammetrics/alignmentSummary.ssp", Map("sampleLevel" -> true))) ++
......@@ -122,10 +122,10 @@ trait MultisampleMappingReportTrait extends MultisampleReportBuilder {
ReportPage(
("Alignment" -> BammetricsReport.bamMetricsPage(summary, Some(sampleId), Some(libId))) ::
(if (flexiprepExecuted) List("QC" -> FlexiprepReport.flexiprepPage) else Nil) :::
(if (krakenExecuted) List("Dustbin analysis" -> ReportPage(List(), List(
"Krona Plot" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp"
)), Map()))
else Nil),
(if (krakenExecuted) List("Dustbin analysis" -> ReportPage(List(), List(
"Krona Plot" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/gears/krakenKrona.ssp"
)), Map()))
else Nil),
"Alignment" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/bammetrics/alignmentSummary.ssp") ::
(if (flexiprepExecuted) List("QC reads" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepReadSummary.ssp"),
"QC bases" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepBaseSummary.ssp"))
......
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