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biopet.biopet
Commits
bdd9d532
Commit
bdd9d532
authored
Jun 20, 2016
by
Sander Bollen
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d717a546
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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala
.../lumc/sasc/biopet/extensions/VariantEffectPredictor.scala
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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala
View file @
bdd9d532
...
...
@@ -155,7 +155,7 @@ class VariantEffectPredictor(val root: Configurable) extends BiopetCommandLineFu
super
.
beforeGraph
()
if
(!
cache
&&
!
database
)
{
Logging
.
addError
(
"Must either set 'cache' or 'database' to true for VariantEffectPredictor"
)
}
else
if
(
cache
&&
dir
.
isEmpty
)
{
}
else
if
(
cache
&&
dir
.
isEmpty
&&
dirCache
.
isEmpty
)
{
Logging
.
addError
(
"Must supply 'dir_cache' to cache for VariantEffectPredictor"
)
}
if
(
statsText
)
_summary
=
new
File
(
output
.
getAbsolutePath
+
"_summary.txt"
)
...
...
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