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biopet.biopet
Commits
ba925f6c
Commit
ba925f6c
authored
Nov 10, 2014
by
Peter van 't Hof
Browse files
Merge branch 'fixsamtofastq' into 'develop'
Fixsamtofastq Added java GC options to DEVELOP See merge request !48
parents
e44e7e62
ffc8be9b
Changes
1
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biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetJavaCommandLineFunction.scala
View file @
ba925f6c
...
...
@@ -5,6 +5,10 @@ import org.broadinstitute.gatk.queue.function.JavaCommandLineFunction
trait
BiopetJavaCommandLineFunction
extends
JavaCommandLineFunction
with
BiopetCommandLineFunctionTrait
{
executable
=
"java"
javaGCThreads
=
config
(
"java_gc_threads"
)
javaGCHeapFreeLimit
=
config
(
"java_gc_heap_freelimit"
)
javaGCTimeLimit
=
config
(
"java_gc_timelimit"
)
override
def
afterGraph
{
memoryLimit
=
config
(
"memory_limit"
)
}
...
...
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