Commit ba925f6c authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Merge branch 'fixsamtofastq' into 'develop'

Fixsamtofastq

Added java GC options to DEVELOP

See merge request !48
parents e44e7e62 ffc8be9b
......@@ -5,6 +5,10 @@ import org.broadinstitute.gatk.queue.function.JavaCommandLineFunction
trait BiopetJavaCommandLineFunction extends JavaCommandLineFunction with BiopetCommandLineFunctionTrait {
executable = "java"
javaGCThreads = config("java_gc_threads")
javaGCHeapFreeLimit = config("java_gc_heap_freelimit")
javaGCTimeLimit = config("java_gc_timelimit")
override def afterGraph {
memoryLimit = config("memory_limit")
}
......
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