Commit ba925f6c authored by Peter van 't Hof's avatar Peter van 't Hof
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Merge branch 'fixsamtofastq' into 'develop'


Added java GC options to DEVELOP

See merge request !48
parents e44e7e62 ffc8be9b
......@@ -5,6 +5,10 @@ import org.broadinstitute.gatk.queue.function.JavaCommandLineFunction
trait BiopetJavaCommandLineFunction extends JavaCommandLineFunction with BiopetCommandLineFunctionTrait {
executable = "java"
javaGCThreads = config("java_gc_threads")
javaGCHeapFreeLimit = config("java_gc_heap_freelimit")
javaGCTimeLimit = config("java_gc_timelimit")
override def afterGraph {
memoryLimit = config("memory_limit")
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