Removing comments and stale file

public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/SeqstatSolexaTest.scala

-/**
- * Copyright (c) 2015 Leiden University Medical Center - Sequencing Analysis Support Core <sasc@lumc.nl>
- * @author Wai Yi Leung <w.y.leung@lumc.nl>
- */
-package nl.lumc.sasc.biopet.tools
-
-import java.io.File
-import java.nio.file.Paths
-
-import htsjdk.samtools.fastq.{ FastqReader, FastqRecord }
-import nl.lumc.sasc.biopet.core.config.Configurable
-import org.mockito.Mockito.{ inOrder => inOrd, when }
-import org.scalatest.Matchers
-import org.scalatest.mock.MockitoSugar
-import org.scalatest.testng.TestNGSuite
-import org.testng.annotations.{ DataProvider, Test }
-
-import scala.collection.JavaConverters._
-
-class SeqstatSolexaTest extends TestNGSuite with MockitoSugar with Matchers {
-
-  import nl.lumc.sasc.biopet.tools.Seqstat._
-
-  private def resourceFile(p: String): File =
-    new File(resourcePath(p))
-
-  private def resourcePath(p: String): String =
-    Paths.get(getClass.getResource(p).toURI).toString
-
-  // Helper functions to create iterator over FastqRecords given its IDs as Ints
-  private def solexaRecordsOver(ids: String*): java.util.Iterator[FastqRecord] = ids
-    .map(x => new FastqRecord(x, "ACTGNACTGN", "", "abcd@ABCD@"))
-    .toIterator.asJava
-
-  @DataProvider(name = "mockReaderProvider")
-  def mockReaderProvider() =
-    Array(
-      Array(mock[FastqReader])
-    )
-
-  @Test def testArgsMinimum() = {
-    val args = Array(
-      "-i", resourcePath("/paired01a.fq"))
-    val parsed = parseArgs(args)
-    parsed.fastq shouldBe resourceFile("/paired01a.fq")
-  }
-}
\ No newline at end of file

public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/SeqstatTest.scala

@@ -57,8 +57,6 @@ class SeqstatTest extends TestNGSuite with MockitoSugar with Matchers {
   def testEncodingDetectionSanger(fqMock: FastqReader) = {
 
     val seqstat = Seqstat
-    //    val numReads = seqstat.seqStat(fqMock)
-    //    numReads shouldBe 1
     seqstat.summarize()
 
     seqstat.phredEncoding shouldBe Sanger