Merge remote-tracking branch 'origin/develop' into feature-external_examples

README.md

docs/index.md

docs/index.md

mkdocs.yml

pom.xml

protected/biopet-gatk-extensions/pom.xml

protected/biopet-gatk-pipelines/pom.xml

protected/biopet-protected-package/pom.xml

protected/pom.xml

public/bam2wig/pom.xml

public/bammetrics/pom.xml

public/basty/pom.xml

public/biopet-framework/pom.xml

...rk/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala

...umc/sasc/biopet/extensions/sambamba/SambambaMarkdup.scala

.../main/scala/nl/lumc/sasc/biopet/tools/VepNormalizer.scala

public/biopet-public-package/pom.xml

public/carp/pom.xml

public/flexiprep/pom.xml

...a/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala