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Commit b4d0e747 authored by bow's avatar bow
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Update project files to IntelliJ 14

parent 5c3e9590
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.idea/libraries/Maven__org_scala_lang_scala_library_2_11_2.xml
View file @ b4d0e747
<component name="libraryTable">
<library name="Maven: org.scala-lang:scala-library:2.11.2">
<library name="Maven: org.scala-lang:scala-library:2.11.2" type="Scala">
<properties>
<compiler-classpath>
<root url="file://$MAVEN_REPOSITORY$/org/scala-lang/scala-compiler/2.11.2/scala-compiler-2.11.2.jar" />
<root url="file://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.2/scala-library-2.11.2.jar" />
<root url="file://$MAVEN_REPOSITORY$/org/scala-lang/scala-reflect/2.11.2/scala-reflect-2.11.2.jar" />
</compiler-classpath>
</properties>
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.2/scala-library-2.11.2.jar!/" />
</CLASSES>
......
.idea/libraries/Maven__org_scalaz_scalaz_core_2_11_7_1_0.xml
View file @ b4d0e747
......@@ -5,6 +5,7 @@
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/scalaz/scalaz-core_2.11/7.1.0/scalaz-core_2.11-7.1.0-javadoc.jar!/" />
<root url="http://docs.typelevel.org/api/scalaz/stable/7.1.0-M3/doc/#package" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/scalaz/scalaz-core_2.11/7.1.0/scalaz-core_2.11-7.1.0-sources.jar!/" />
......
.idea/scala_compiler.xml 0 → 100644
View file @ b4d0e747
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="ScalaCompilerConfiguration">
<option name="deprecationWarnings" value="true" />
<parameters>
<parameter value="-dependencyfile" />
<parameter value="$MODULE_DIR$/target/.scala_dependencies" />
<parameter value="-feature" />
</parameters>
</component>
</project>
\ No newline at end of file
projectFilesBackup/.idea/libraries/Maven__org_scala_lang_scala_compiler_bundle_2_11_2.xml 0 → 100644
View file @ b4d0e747
<component name="libraryTable">
<library name="Maven: org.scala-lang:scala-compiler-bundle:2.11.2">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-compiler/2.11.2/scala-compiler-2.11.2.jar!/" />
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.2/scala-library-2.11.2.jar!/" />
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-reflect/2.11.2/scala-reflect-2.11.2.jar!/" />
</CLASSES>
<JAVADOC />
<SOURCES />
</library>
</component>
\ No newline at end of file
projectFilesBackup/.idea/libraries/Maven__org_scala_lang_scala_library_2_11_2.xml 0 → 100644
View file @ b4d0e747
<component name="libraryTable">
<library name="Maven: org.scala-lang:scala-library:2.11.2">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.2/scala-library-2.11.2.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.2/scala-library-2.11.2-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.2/scala-library-2.11.2-sources.jar!/" />
</SOURCES>
</library>
</component>
\ No newline at end of file
projectFilesBackup/biopet-framework/BiopetFramework.iml 0 → 100644
View file @ b4d0e747
<?xml version="1.0" encoding="UTF-8"?>
<module org.jetbrains.idea.maven.project.MavenProjectsManager.isMavenModule="true" type="JAVA_MODULE" version="4">
<component name="FacetManager">
<facet type="scala" name="Scala">
<configuration>
<option name="compilerLibraryLevel" value="Project" />
<option name="compilerLibraryName" value="Maven: org.scala-lang:scala-compiler-bundle:2.11.2" />
<option name="compilerOptions" value="-dependencyfile $MODULE_DIR$/target/.scala_dependencies -feature" />
<option name="deprecationWarnings" value="true" />
<option name="languageLevel" value="Scala 2.11" />
<option name="vmOptions" value="" />
</configuration>
</facet>
<facet type="Python" name="Python">
<configuration sdkName="" />
</facet>
</component>
<component name="NewModuleRootManager" inherit-compiler-output="false">
<output url="file://$MODULE_DIR$/target/classes" />
<output-test url="file://$MODULE_DIR$/target/test-classes" />
<content url="file://$MODULE_DIR$">
<sourceFolder url="file://$MODULE_DIR$/src/main/scala" isTestSource="false" />
<sourceFolder url="file://$MODULE_DIR$/src/test/scala" isTestSource="true" />
<sourceFolder url="file://$MODULE_DIR$/src/main/scripts" type="java-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/main/resources" type="java-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/test/resources" type="java-test-resource" />
<excludeFolder url="file://$MODULE_DIR$/target" />
</content>
<orderEntry type="inheritedJdk" />
<orderEntry type="sourceFolder" forTests="false" />
<orderEntry type="library" name="com.twitter:algebird-core_2.10:0.8.1" level="project" />
<orderEntry type="library" name="gatk-protected" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.testng:testng:6.8" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: junit:junit:4.10" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.hamcrest:hamcrest-core:1.1" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.beanshell:bsh:2.0b4" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: com.beust:jcommander:1.27" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.yaml:snakeyaml:1.6" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.mockito:mockito-all:1.9.5" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.scalatest:scalatest_2.11:2.2.1" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.scala-lang:scala-reflect:2.11.2" level="project" />
<orderEntry type="library" name="Maven: org.scala-lang.modules:scala-xml_2.11:1.0.2" level="project" />
<orderEntry type="library" name="Maven: org.scala-lang:scala-library:2.11.2" level="project" />
<orderEntry type="library" name="Maven: org.broadinstitute.gatk:gatk-queue-package-distribution:3.3" level="project" />
<orderEntry type="library" name="Maven: io.argonaut:argonaut_2.11:6.1-M4" level="project" />
<orderEntry type="library" name="Maven: org.scalaz:scalaz-core_2.11:7.1.0" level="project" />
<orderEntry type="library" name="Maven: org.scala-lang.modules:scala-parser-combinators_2.11:1.0.2" level="project" />
<orderEntry type="library" name="Maven: com.github.julien-truffaut:monocle-core_2.11:0.5.0" level="project" />
<orderEntry type="library" name="Maven: org.biojava:biojava3-core:3.1.0" level="project" />
<orderEntry type="library" name="Maven: org.biojava:biojava3-sequencing:3.1.0" level="project" />
<orderEntry type="library" name="Maven: com.google.guava:guava:18.0" level="project" />
<orderEntry type="library" name="Maven: com.github.scopt:scopt_2.10:3.2.0" level="project" />
</component>
</module>
\ No newline at end of file
projectFilesBackup1/.idea/libraries/Maven__org_scala_lang_scala_compiler_bundle_2_11_2.xml 0 → 100644
View file @ b4d0e747
<component name="libraryTable">
<library name="Maven: org.scala-lang:scala-compiler-bundle:2.11.2">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-compiler/2.11.2/scala-compiler-2.11.2.jar!/" />
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.2/scala-library-2.11.2.jar!/" />
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-reflect/2.11.2/scala-reflect-2.11.2.jar!/" />
</CLASSES>
<JAVADOC />
<SOURCES />
</library>
</component>
\ No newline at end of file
projectFilesBackup1/.idea/libraries/Maven__org_scala_lang_scala_library_2_11_2.xml 0 → 100644
View file @ b4d0e747
<component name="libraryTable">
<library name="Maven: org.scala-lang:scala-library:2.11.2">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.2/scala-library-2.11.2.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.2/scala-library-2.11.2-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.2/scala-library-2.11.2-sources.jar!/" />
</SOURCES>
</library>
</component>
\ No newline at end of file
projectFilesBackup1/biopet-framework/BiopetFramework.iml 0 → 100644
View file @ b4d0e747
<?xml version="1.0" encoding="UTF-8"?>
<module org.jetbrains.idea.maven.project.MavenProjectsManager.isMavenModule="true" type="JAVA_MODULE" version="4">
<component name="FacetManager">
<facet type="scala" name="Scala">
<configuration>
<option name="compilerLibraryLevel" value="Project" />
<option name="compilerLibraryName" value="Maven: org.scala-lang:scala-compiler-bundle:2.11.2" />
<option name="compilerOptions" value="-dependencyfile $MODULE_DIR$/target/.scala_dependencies -feature" />
<option name="deprecationWarnings" value="true" />
<option name="languageLevel" value="Scala 2.11" />
<option name="vmOptions" value="" />
</configuration>
</facet>
<facet type="Python" name="Python">
<configuration sdkName="" />
</facet>
</component>
<component name="NewModuleRootManager" inherit-compiler-output="false">
<output url="file://$MODULE_DIR$/target/classes" />
<output-test url="file://$MODULE_DIR$/target/test-classes" />
<content url="file://$MODULE_DIR$">
<sourceFolder url="file://$MODULE_DIR$/src/main/scala" isTestSource="false" />
<sourceFolder url="file://$MODULE_DIR$/src/test/scala" isTestSource="true" />
<sourceFolder url="file://$MODULE_DIR$/src/main/scripts" type="java-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/main/resources" type="java-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/test/resources" type="java-test-resource" />
<excludeFolder url="file://$MODULE_DIR$/target" />
</content>
<orderEntry type="inheritedJdk" />
<orderEntry type="sourceFolder" forTests="false" />
<orderEntry type="library" name="com.twitter:algebird-core_2.10:0.8.1" level="project" />
<orderEntry type="library" name="gatk-protected" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.testng:testng:6.8" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: junit:junit:4.10" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.hamcrest:hamcrest-core:1.1" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.beanshell:bsh:2.0b4" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: com.beust:jcommander:1.27" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.yaml:snakeyaml:1.6" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.mockito:mockito-all:1.9.5" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.scalatest:scalatest_2.11:2.2.1" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.scala-lang:scala-reflect:2.11.2" level="project" />
<orderEntry type="library" name="Maven: org.scala-lang.modules:scala-xml_2.11:1.0.2" level="project" />
<orderEntry type="library" name="Maven: org.scala-lang:scala-library:2.11.2" level="project" />
<orderEntry type="library" name="Maven: org.broadinstitute.gatk:gatk-queue-package-distribution:3.3" level="project" />
<orderEntry type="library" name="Maven: io.argonaut:argonaut_2.11:6.1-M4" level="project" />
<orderEntry type="library" name="Maven: org.scalaz:scalaz-core_2.11:7.1.0" level="project" />
<orderEntry type="library" name="Maven: org.scala-lang.modules:scala-parser-combinators_2.11:1.0.2" level="project" />
<orderEntry type="library" name="Maven: com.github.julien-truffaut:monocle-core_2.11:0.5.0" level="project" />
<orderEntry type="library" name="Maven: org.biojava:biojava3-core:3.1.0" level="project" />
<orderEntry type="library" name="Maven: org.biojava:biojava3-sequencing:3.1.0" level="project" />
<orderEntry type="library" name="Maven: com.google.guava:guava:18.0" level="project" />
<orderEntry type="library" name="Maven: com.github.scopt:scopt_2.10:3.2.0" level="project" />
<orderEntry type="library" name="scala-sdk-2.11.1" level="application" />
</component>
</module>
\ No newline at end of file
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