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b3553528

Commit b3553528 authored 10 years ago by Peter van 't Hof

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Gatk now uses the mapping module

parent 8d195010

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Changes 5

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gatk/examples/test.json 28 additions, 0 deletions

gatk/examples/test.json
gatk/nbactions.xml 3 additions, 3 deletions

gatk/nbactions.xml
gatk/pom.xml 1 addition, 1 deletion

gatk/pom.xml
gatk/src/main/java/nl/lumc/sasc/biopet/pipelines/gatk/Gatk.scala 28 additions, 55 deletions

...c/main/java/nl/lumc/sasc/biopet/pipelines/gatk/Gatk.scala
mapping/src/main/java/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala 5 additions, 1 deletion

.../java/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala

with 65 additions and 60 deletions

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