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Commit af141f38 authored by Peter van 't Hof's avatar Peter van 't Hof
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Moved to flexiprep maven app

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flexiprep/src/main/java/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
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...@@ -2,6 +2,7 @@ package nl.lumc.sasc.biopet.pipelines.flexiprep ...@@ -2,6 +2,7 @@ package nl.lumc.sasc.biopet.pipelines.flexiprep
import nl.lumc.sasc.biopet.core._ import nl.lumc.sasc.biopet.core._
import nl.lumc.sasc.biopet.wrappers._ import nl.lumc.sasc.biopet.wrappers._
import nl.lumc.sasc.biopet.wrappers.fastq._
import org.broadinstitute.sting.queue.QScript import org.broadinstitute.sting.queue.QScript
import org.broadinstitute.sting.queue.extensions.gatk._ import org.broadinstitute.sting.queue.extensions.gatk._
import org.broadinstitute.sting.queue.extensions.picard._ import org.broadinstitute.sting.queue.extensions.picard._
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biopet-framework/src/main/java/nl/lumc/sasc/biopet/wrappers/Cutadapt.scala → flexiprep/src/main/java/nl/lumc/sasc/biopet/wrappers/fastq/Cutadapt.scala
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package nl.lumc.sasc.biopet.wrappers package nl.lumc.sasc.biopet.wrappers.fastq
import nl.lumc.sasc.biopet.core._ import nl.lumc.sasc.biopet.core._
import org.broadinstitute.sting.queue.function.CommandLineFunction import org.broadinstitute.sting.queue.function.CommandLineFunction
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