Commit af0d834a authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed intermediate

parent 4d4c3097
......@@ -168,7 +168,7 @@ trait MultisampleMappingTrait extends MultiSampleQScript
aorrg.RGSM = sampleId
aorrg.RGPL = config("rgpl", default = "unknown")
aorrg.RGPU = config("rgpu", default = "na")
aorrg.isIntermediate = true
aorrg.isIntermediate = libraries.size > 1
qscript.add(aorrg)
}
} else add(Ln.linkBamFile(qscript, inputBam.get, bamFile.get): _*)
......
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