Commit aa8fe3fd authored by bow's avatar bow
Browse files

Fix test failure caused by incorrectly named function

parent 675718da
......@@ -61,6 +61,7 @@ class RawBaseCounter(val root: Configurable) extends BiopetCommandLineFunction {
private def bedtoolsCovHist = new BiopetCommandLineFunction {
var bam: File = null
override val configName = "bedtoolscoverage"
override val root: Configurable = wrapper.root
executable = config("exe", default = "coverageBed", freeVar = false)
override def cmdLine: String = required(executable) +
......
......@@ -197,7 +197,7 @@ object GentrapTest {
// mapping executables
"star", "bowtie", "samtools", "gsnap", "tophat",
// gentrap executables
"cufflinks", "htseqcount", "grep", "pdflatex", "rscript", "tabix", "bgzip",
"cufflinks", "htseqcount", "grep", "pdflatex", "rscript", "tabix", "bgzip", "bedtoolscoverage",
// bam2wig executables
"igvtools", "wigtobigwig"
).map { case exe => exe -> Map("exe" -> "test") }.toMap
......
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