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a91aa4a6

Commit a91aa4a6 authored 9 years ago by Sander Bollen

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adding checkAllelesVcfInBamTest stub and adding bgzipped and tabixed VCF files...

adding checkAllelesVcfInBamTest stub and adding bgzipped and tabixed VCF files for tools that need indexed files

parent fabd42e8

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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBam.scala 1 addition, 1 deletion

...cala/nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBam.scala
public/biopet-framework/src/test/resources/VEP_oneline.vcf.gz 0 additions, 0 deletions

...ic/biopet-framework/src/test/resources/VEP_oneline.vcf.gz
public/biopet-framework/src/test/resources/VEP_oneline.vcf.gz.tbi 0 additions, 0 deletions

...iopet-framework/src/test/resources/VEP_oneline.vcf.gz.tbi
public/biopet-framework/src/test/resources/chrQ.vcf 85 additions, 0 deletions

public/biopet-framework/src/test/resources/chrQ.vcf
public/biopet-framework/src/test/resources/unvepped.vcf.gz 0 additions, 0 deletions

public/biopet-framework/src/test/resources/unvepped.vcf.gz
public/biopet-framework/src/test/resources/unvepped.vcf.gz.tbi 0 additions, 0 deletions

...c/biopet-framework/src/test/resources/unvepped.vcf.gz.tbi
public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBamTest.scala 44 additions, 0 deletions

.../nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBamTest.scala
public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/tools/VcfWithVcfTest.scala 5 additions, 5 deletions

...test/scala/nl/lumc/sasc/biopet/tools/VcfWithVcfTest.scala

with 135 additions and 6 deletions

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