Commit a88b5ab5 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed biopet logging

parent 8337024e
......@@ -84,7 +84,7 @@ trait PipelineCommand extends MainCommand with GatkLogging with ImplicitConversi
}
val a = new WriterAppender(new PatternLayout("%-5p [%d] [%C{1}] - %m%n"), new PrintWriter(logFile))
logger.addAppender(a)
Logging.logger.addAppender(a)
var argv: Array[String] = Array()
argv ++= Array("-S", pipeline)
......
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