Commit a81bce67 authored 9 years ago by Peter van 't Hof

Moved config to utils

parent 10e09e28

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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Cufflinks.scala 1 addition, 1 deletion

...main/scala/nl/lumc/sasc/biopet/extensions/Cufflinks.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Cuffquant.scala 1 addition, 1 deletion

...main/scala/nl/lumc/sasc/biopet/extensions/Cuffquant.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Cutadapt.scala 1 addition, 1 deletion

.../main/scala/nl/lumc/sasc/biopet/extensions/Cutadapt.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Fastqc.scala 1 addition, 1 deletion

...rc/main/scala/nl/lumc/sasc/biopet/extensions/Fastqc.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala 1 addition, 1 deletion

...main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Gsnap.scala 1 addition, 1 deletion

...src/main/scala/nl/lumc/sasc/biopet/extensions/Gsnap.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Gzip.scala 1 addition, 1 deletion

.../src/main/scala/nl/lumc/sasc/biopet/extensions/Gzip.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/HtseqCount.scala 1 addition, 1 deletion

...ain/scala/nl/lumc/sasc/biopet/extensions/HtseqCount.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala 1 addition, 1 deletion

...rk/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Md5sum.scala 1 addition, 1 deletion

...rc/main/scala/nl/lumc/sasc/biopet/extensions/Md5sum.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Pbzip2.scala 1 addition, 1 deletion

...rc/main/scala/nl/lumc/sasc/biopet/extensions/Pbzip2.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Raxml.scala 1 addition, 1 deletion

...src/main/scala/nl/lumc/sasc/biopet/extensions/Raxml.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/RunGubbins.scala 1 addition, 1 deletion

...ain/scala/nl/lumc/sasc/biopet/extensions/RunGubbins.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Sha1sum.scala 1 addition, 1 deletion

...c/main/scala/nl/lumc/sasc/biopet/extensions/Sha1sum.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Sickle.scala 1 addition, 1 deletion

...rc/main/scala/nl/lumc/sasc/biopet/extensions/Sickle.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Stampy.scala 1 addition, 1 deletion

...rc/main/scala/nl/lumc/sasc/biopet/extensions/Stampy.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala 1 addition, 1 deletion

.../src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Tabix.scala 1 addition, 1 deletion

...src/main/scala/nl/lumc/sasc/biopet/extensions/Tabix.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Tophat.scala 1 addition, 1 deletion

...rc/main/scala/nl/lumc/sasc/biopet/extensions/Tophat.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala 1 addition, 1 deletion

.../lumc/sasc/biopet/extensions/VariantEffectPredictor.scala

with 20 additions and 20 deletions

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