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a49ae40e

Commit a49ae40e authored 9 years ago by Peter van 't Hof

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Added pickOtus step

parent 1a5f1520

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Changes 6

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public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/qiime/PickOtus.scala 137 additions, 0 deletions

...scala/nl/lumc/sasc/biopet/extensions/qiime/PickOtus.scala
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/ExtractUnmappedReads.scala 2 additions, 2 deletions

...mc/sasc/biopet/pipelines/gears/ExtractUnmappedReads.scala
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala 13 additions, 13 deletions

...ain/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsKraken.scala 4 additions, 4 deletions

...ala/nl/lumc/sasc/biopet/pipelines/gears/GearsKraken.scala
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsQiimeRatx.scala 7 additions, 3 deletions

.../nl/lumc/sasc/biopet/pipelines/gears/GearsQiimeRatx.scala
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala 11 additions, 6 deletions

...ala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala

with 174 additions and 28 deletions

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