Fixed output

a3c21103 · Peter van 't Hof · 9bc45be2 · a3c21103
Commit a3c21103 authored May 17, 2016 by Peter van 't Hof
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biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/GtfToGenePred.scala .../scala/nl/lumc/sasc/biopet/extensions/GtfToGenePred.scala +1 -1

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--- a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/GtfToGenePred.scala
+++ b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/GtfToGenePred.scala
@@ -36,5 +36,5 @@ class GtfToGenePred(val root: Configurable) extends BiopetCommandLineFunction {
    conditional(simple, "-simple") +
    conditional(geneNameAsName2, "-geneNameAsName2") +
    repeat(inputGtfs) +
-    (if (outputAsStsout) "" else " > " + required(outputGenePred))
+    (if (outputAsStsout) required("/dev/stdout") else required(outputGenePred))
 }