Commit a3af8046 authored 9 years ago by Peter van 't Hof

Fix code style warnings

parent fd956f72

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public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BammetricsReport.scala 3 additions, 3 deletions

...c/sasc/biopet/pipelines/bammetrics/BammetricsReport.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Bowtie.scala 3 additions, 4 deletions

...rc/main/scala/nl/lumc/sasc/biopet/extensions/Bowtie.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Cat.scala 1 addition, 1 deletion

...k/src/main/scala/nl/lumc/sasc/biopet/extensions/Cat.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Cutadapt.scala 1 addition, 1 deletion

.../main/scala/nl/lumc/sasc/biopet/extensions/Cutadapt.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala 4 additions, 2 deletions

...main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Gzip.scala 1 addition, 1 deletion

.../src/main/scala/nl/lumc/sasc/biopet/extensions/Gzip.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala 7 additions, 7 deletions

...rk/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Md5sum.scala 2 additions, 2 deletions

...rc/main/scala/nl/lumc/sasc/biopet/extensions/Md5sum.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Pbzip2.scala 3 additions, 3 deletions

...rc/main/scala/nl/lumc/sasc/biopet/extensions/Pbzip2.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/PythonCommandLineFunction.scala 1 addition, 1 deletion

...mc/sasc/biopet/extensions/PythonCommandLineFunction.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Raxml.scala 2 additions, 2 deletions

...src/main/scala/nl/lumc/sasc/biopet/extensions/Raxml.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/RscriptCommandLineFunction.scala 3 additions, 1 deletion

...c/sasc/biopet/extensions/RscriptCommandLineFunction.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/RunGubbins.scala 2 additions, 2 deletions

...ain/scala/nl/lumc/sasc/biopet/extensions/RunGubbins.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Sha1sum.scala 1 addition, 1 deletion

...c/main/scala/nl/lumc/sasc/biopet/extensions/Sha1sum.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Sickle.scala 4 additions, 6 deletions

...rc/main/scala/nl/lumc/sasc/biopet/extensions/Sickle.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Stampy.scala 2 additions, 2 deletions

...rc/main/scala/nl/lumc/sasc/biopet/extensions/Stampy.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala 9 additions, 9 deletions

.../src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Tabix.scala 1 addition, 1 deletion

...src/main/scala/nl/lumc/sasc/biopet/extensions/Tabix.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala 2 additions, 2 deletions

.../lumc/sasc/biopet/extensions/VariantEffectPredictor.scala
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Zcat.scala 1 addition, 1 deletion

.../src/main/scala/nl/lumc/sasc/biopet/extensions/Zcat.scala

with 53 additions and 52 deletions

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