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biopet.biopet
Commits
a207d0b6
Commit
a207d0b6
authored
10 years ago
by
bow
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Fix duplicate value on valid cufflinks measures
parent
10873179
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public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/CufflinksProducer.scala
+3
-2
3 additions, 2 deletions
...umc/sasc/biopet/pipelines/gentrap/CufflinksProducer.scala
with
3 additions
and
2 deletions
public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/CufflinksProducer.scala
+
3
−
2
View file @
a207d0b6
...
...
@@ -13,7 +13,7 @@ trait CufflinksProducer { this: Gentrap#Sample =>
import
Gentrap.StrandProtocol._
/** Valid cufflink measure types */
protected
val
cufflinksMeasures
=
Set
(
CufflinksStrict
,
CufflinksGuided
,
Cufflinks
Strict
)
protected
val
cufflinksMeasures
=
Set
(
CufflinksStrict
,
CufflinksGuided
,
Cufflinks
Blind
)
/** Cufflink's terms for strand specificity */
lazy
val
strandedness
:
String
=
{
...
...
@@ -28,7 +28,8 @@ trait CufflinksProducer { this: Gentrap#Sample =>
/** Case class for containing cufflinks + its output symlink jobs */
protected
case
class
CufflinksJobSet
(
cuffType
:
ExpMeasures.Value
)
{
require
(
cufflinksMeasures
.
contains
(
cuffType
),
"Cufflinks measurement type is either strict, guided, or blind"
)
require
(
cufflinksMeasures
.
contains
(
cuffType
),
"Cufflinks measurement type is either "
+
cufflinksMeasures
.
mkString
(
", "
)
+
s
"; not $cuffType"
)
/** Base name for output file extensions and config path */
lazy
val
name
:
String
=
cuffType
match
{
...
...
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