Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
a0e4262d
Commit
a0e4262d
authored
Jun 28, 2015
by
bow
Browse files
Update default memory settings
parent
10363d74
Changes
3
Hide whitespace changes
Inline
Side-by-side
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectMultipleMetrics.scala
View file @
a0e4262d
...
...
@@ -15,6 +15,8 @@ class CollectMultipleMetrics(val root: Configurable) extends Picard with Summari
javaMainClass
=
new
picard
.
analysis
.
CollectMultipleMetrics
().
getClass
.
getName
override
val
defaultCoreMemory
=
6.0
@Input
(
doc
=
"The input SAM or BAM files to analyze"
,
required
=
true
)
var
input
:
File
=
null
...
...
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstat.scala
View file @
a0e4262d
...
...
@@ -36,7 +36,7 @@ class BiopetFlagstat(val root: Configurable) extends ToolCommandFuntion with Sum
@Output
(
doc
=
"summary output file"
,
shortName
=
"output"
,
required
=
false
)
var
summaryFile
:
File
=
_
override
val
defaultCoreMemory
=
2
.0
override
val
defaultCoreMemory
=
6
.0
override
def
commandLine
=
super
.
commandLine
+
required
(
"-I"
,
input
)
+
required
(
"-s"
,
summaryFile
)
+
" > "
+
required
(
output
)
...
...
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/MergeTables.scala
View file @
a0e4262d
...
...
@@ -32,7 +32,7 @@ class MergeTables(val root: Configurable) extends ToolCommandFuntion {
javaMainClass
=
getClass
.
getName
override
val
defaultCoreMemory
=
2
.0
override
val
defaultCoreMemory
=
6
.0
/** List of input tabular files */
@Input
(
doc
=
"Input table files"
,
required
=
true
)
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment